Plant MITE

SE3720138

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11206
Solanum lycopersicum
SE3720138
Mutator
M14
SL2.40ch05:19704086-19704408
TTTTCTATT
GGAAAATGCACAAGTACCTCCCTAGACTACGACCAAATCACAGAGACACACTTTAACTAAACTAAGGTCCTATTACCCTCCTGAAC

Secondary structure and sequence

TSD TIR

5'

3'

TTTTCTATTA                             C       -TCA   A A               C     -TC          CC     CATT        G    TT  A         T G     GT -    CCAAAT   TCCCT    CCT
          GGAAAATGCACAAGTACCTCCCTAGACTA GACCAAA    CAG G CACACTTTAACTAAA TAAGG   CTATTACCCT  TGAAC    TTTTTTTG TAAT  TG GCACCTTTT G CTTAC  G ACAT      ATC     CGCA   
          ||||||||||||||||||||||||||||| |||||||    ||| | ||||||||||||||| |||||   ||||||||||  |||||    |||||||| ||||  || ||||||||| | |||||  | ||||      |||     ||||   C
          CCTTTTACGTGTTCATGGGGGGATCTGAT CTGGTTT    GTC C GTGTGGAATTGATTT ATTCC   GATAATGGGG  ACTTG    AAAAAAAC ATTA  AT TGTGGAAAA C GAATG  C TGTG      TAG     GCGT   
TTATCTTTTC                             A       TAAA   - -               A     CAA          AA     -AAT        -    TT  A         - A     AT G    AAACAC   --TAT    TAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720138

TTTTCTATTAGGAAAATGCACAAGTACCTCCCTAGACTACGACCAAATCACAGAGACACACTTTAACTAAACTAAGGTCCTATTACCCTCCTGAACCATTTTTTTTTGGTAATTTTGAGCACCTTTTTGGCTTACGTGACATCCAAATATCTCCCTCGCACCTCAATTGCGTATGATCACAAAGTGTGCTAGTAAGACAAAAGGTGTATATTATTACAAAAAAATAAGTTCAAAGGGGTAATAGAACCCTTAATTTAGTTAAGGTGTGCCTGAAATTTTGGTCATAGTCTAGGGGGGTACTTGTGCATTTTCCCTTTTCTATT

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