SE3720149

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11217
  • Solanum lycopersicum
  • SE3720149
  • Mutator
  • M5
  • SL2.40ch09:55835870-55836183
  • TATAATAAA
  • GGAAAAAAAGTATGAAATATATTCGAATTTTGATCAAGATTGTTGTAATGATATCAAACTTTGGAAAGAACCTTTTACCCTCCTGCACTATTTAATAGTGTATTTTAAAAGTATATATGTGCCCACATGGATACA

Secondary structure and sequence

TSD    TIR
5'



3' 
  TATAATAAA      AAA  A     T     CG          A          A       C   -CTT    AA  A       -   TCC  CAC                     A             C  A        AAAAA    GCATA
           GGAAAA   GT TGAAA ATATT  AATTTTGATC AGATTGTTGT ATGATAT AAA    TGGA  GA CCTTTTA CCC   TG   TATTTAATAGTGTATTTTAAA GTATATATGTGCC AC TGGATACA     TATT     
           ||||||   || ||||| |||||  |||||||||| |||||||||| ||||||| |||    ||||  || ||||||| |||   ||   ||||||||||||||||||||| ||||||||||||| || ||||||||     ||||     A
           CCTTTT   CA ACTTT TATAA  TTAAAACTAG TTTAACAACA TGCTATA TTT    ACCT  CT GGAAAAT GGG   AC   ATAAATTATCACATAAAATTT CATGTATACACGG TG ACCTGTGT     ATAA     
AAATAATAATC      --C  A     T     AG          C          A       T   AAAT    -A  -       A   --T  ATA                     C             T  C        -AATG    ATATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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