Plant MITE

SE3750150

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11218
Solanum lycopersicum
SE3750150
PIF/harbinger
To1
SL2.40ch07:45000873-45001524
TTA
GCT

Secondary structure and sequence

TSD TIR

5'

3'

  TTA   AGCA               -       T    -  --T    A -       GTAAAAATTTGAGTGAAATTTTGTCATGTGTTTGGCCATAGTATTTGGAAAATATATTTCATCTTTTTAGAAAAAATATGATTTATACCTATAAGTTTGAAAAACTATTAAAACTAACCATAAGTTTGTATTACAAATCAATTGGATTTTCTTTGCAACTATAGCAACTAGTGTCCATGACACTAGAGCAATGTGGTAATTTGGATTGAGTGCAATAAACATCATTCCATACATCGGAAAGTAAACAATGTATATAACTTTGTTATCCTGA
     GCT    TTTGGTCATAGATTT CCAAATA TATT GA   AAAT T TATTTAG                                                                                                                                                                                                                                                                               
     |||    ||||||||||||||| ||||||| |||| ||   |||| | |||||||                                                                                                                                                                                                                                                                                
     CGG    AAACCGGTATCTAAA GGTTTAT ATAA CT   TTAT A ACCGTTT                                                                                                                                                                                                                                                                               
ATTCC   --GC               A       T    A  CTT    - A       ATTACAAACAGGTATATGACACAGTAATAAACCGTTTATAGGGCTTAAGAGTTTATGATCAAAAAAGATCATAAACCCAGTTTAGAGTAATAAACCCTAGAAAACTTTTATGTATAAATTGGGGTTTGAAAATAGAAAATATTTTTGTGGGAGATATTATCAAAGAACGCAACATAAAGTAAAAAAAATACAATTGTGGTTTTATCACTACTTTATAAGTCATTTACAATTTACTACTATACTAATAACTACTTTTACTTCTTATTAACCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3750150

TTAGCTAGCATTTGGTCATAGATTTCCAAATATTATTGATAAATATTATTTAGGTAAAAATTTGAGTGAAATTTTGTCATGTGTTTGGCCATAGTATTTGGAAAATATATTTCATCTTTTTAGAAAAAATATGATTTATACCTATAAGTTTGAAAAACTATTAAAACTAACCATAAGTTTGTATTACAAATCAATTGGATTTTCTTTGCAACTATAGCAACTAGTGTCCATGACACTAGAGCAATGTGGTAATTTGGATTGAGTGCAATAAACATCATTCCATACATCGGAAAGTAAACAATGTATATAACTTTGTTATCCTGAGCCAATTATTCTTCATTTTCATCAATAATCATATCATCATTTAACATTTACTGAATATTTCATCACTATTTTGGTGTTAACATAAAAAAAATGAAATACAACGCAAGAAACTATTATAGAGGGTGTTTTTATAAAAGATAAAAGTTTGGGGTTAAATATGTATTTTCAAAAGATCCCAAATAATGAGATTTGACCCAAATACTAGAAAAAACTAGTATTTGAGAATTCGGGATATTTGCCAAATAATGACACAGTATATGGACAAACATTATTTGCCAAATATTTTCTCAAATATTATTTGGAAAATCTATGGCCAAACGGGCCCTTA

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