SE3720155

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11223
  • Solanum lycopersicum
  • SE3720155
  • Mutator
  • M5
  • SL2.40ch07:46608352-46608661
  • TTTAGTGTA
  • TAGTGTAGGGAAAACGATATGAAAAATATTTTAATTTTAG

Secondary structure and sequence

TSD    TIR
5'



3'
TT  G  T        C ATA     A      T      A TCAAA     ---     CA     AAA  ATA    -  AT     -     -     C         ATA                      C  C       ------------       AT
  TA TG AGGGAAAA G   TGAAA ATATTT AATTTT G     ATTGA   TGTTA  ATACC   CT   TGGA CG  CCTTT ACCCC CTGCA TATTTAATA   TATTTTAAAGGTATATATGTGC CA GTGGACA            CATTACT  
  || || |||||||| |   ||||| |||||| |||||| |     |||||   |||||  |||||   ||   |||| ||  ||||| ||||| ||||| |||||||||   |||||||||||||||||||||| || |||||||            |||||||   
  AT AT TCCCTTTT C   ACTTT TATAAG TTGAAA C     TGACT   ACAAT  TATGG   GA   ACCT GC  GGAAA TGGGG GATGT ATAAATTAT   ATAAAATTTCCATGTATACACG GT CGCCTGT            GTAGTGA  
AT  G  T        T CAG     A      C      - -----     TTA     AC     CTG  --A    T  CT     A     A     A         CAC                      A  A       AATATTTATAAC       TT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End