SE3720195

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11263
  • Solanum lycopersicum
  • SE3720195
  • Mutator
  • M6
  • SL2.40ch01:77030321-77031043
  • TTGTTTAAT
  • T

Secondary structure and sequence

TSD    TIR
5'



3' 
            T   TT   --    ---  ATT       ATGACAAATTAATAATATAAAATAAATATAGTAGCTATCCTTTGATTTATTTGTGTTTCATAGCAAACTGTTTGTCAGTTTATCTCTCCCTCATATTCGCGCTCGTCACTTTCGCTCTCACTCTCTCGCTCGCTTATTCTTGTCGCTCGTCTCTCTCGTTTTATACAGTAGAATTGTATAAATTGTATTTTTAATTGTATAAAGCGAGAGAAAATTGTATAAATGCATGTAAATACATATATCTTTGTTCTATAGACTTATAATTATACAATACAAATATTTTTCTGCCCAAGTCTCTTTTGTCTTTCTCGTTTTATACAAATTCAAATT
             TGT  AAT  GGGA   AA   GTATGAA                                                                                                                                                                                                                                                                                                                                          
             |||  |||  ||||   ||   |||||||                                                                                                                                                                                                                                                                                                                                          G
             TTG  AAA  ATAT   GT   TTGTATT                                                                                                                                                                                                                                                                                                                                          
TAATTTGCTCCCG   --   GT    ATC  ---       TTAAGTATAAACATACAATATCGTTTCAAATATATTAACACAAGGTATCGTTTGTGTGTGTGTATATATATATATATATATTAAGCAATATGTATATGTTAACTTCGTTTAACATATTTTGTTCTTTCTCTCTTTAATATATGTTAAACTTATCATATTTTACTCTTTCGCTCTTTCCGCCTTAACTTATCATATTTTACTCTTTCTCTCTTTATATATATGTTAAACTTAAACATATTTTGCTCTTTCTCTCTTTCCGTTTTTCTCTGAACATGTCCCTTATATGTTAACTTAGCTTAACATATTTTGCTCTTTCTCTCTTTAATATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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