SE3740196

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11264
  • Solanum lycopersicum
  • SE3740196
  • CACTA
  • Ca2
  • SL2.40ch12:6912149-6912362
  • ATA
  • CACTACAACAAAAATGACTATTAGCGGCATTTAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATA                   A           T   -TCT    -        AATATATATTTTTAGCGGCAATTGTCACTCTTTGTATATGTCCCTAAAGCCTT
   CACTACAACAAAAATGACT TTAGCGGCATT AAT    TAAT TGTCGCTA                                                     
   ||||||||||||||||||| ||||||||||| |||    |||| ||||||||                                                      
   GTGATGTTGTTTTTATTGA AATCGCCGTAA TTA    TGTG TTATTTCT                                                     
ATA                   A           T   TAAC    A        CACAATTTCAGAAATGGCCATAATCAATTCACGATAATCTTAGTTACAGCGAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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