Plant MITE

SE3750197

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11265
Solanum lycopersicum
SE3750197
PIF/harbinger
To3
SL2.40ch06:35580124-35580880
TAA
AGGGTGTGTTTGGTATGAAGGAAAAT

Secondary structure and sequence

TSD TIR

5'

3'

TA                                  T     T ---------------     - CTAGAAAATGCTTTCCTGGAAAACAAGTAGATTTTGAACTTATTTTCTCATGTTTGGTTGGTGAGTAGAAAATATTTTCTGAAAATGATTTTTTGTGTTTGATTTATGAATGAAAAATATTTTTGAGGAACATCTTTTATTTTTTACTAAAGTAGAAAATAATTTATGAAATTGAAAATATTTTTTAAAAACATGGGGTAGTGTGGGGGCAGGGGGAGGGGTAGGAGTGAAAAAATAAAAATTTGAAGTTGATAGTATTTTTAAAAAGCAAAATTAATTTTTTGAGGGTGGGGGTGGGGTGGGGTGGCTGGCCCGGGGAGG
  AGGGTGTGTTTGGTATGAAGGAAAATGTTTTCCA GGAGA T               ATTTT T                                                                                                                                                                                                                                                                                                                                 
  |||||||||||||||||||||||||||||||||| ||||| |               ||||| |                                                                                                                                                                                                                                                                                                                                 G
  TCTCACACAAACCATGCTTCTTTTTGTAAAAGAG TACAA A               AACCA C                                                                                                                                                                                                                                                                                                                                 
AA                                  -     - AAGTTAAAAGAGTAA     A CTCGTTTTTAAAACTTTTTATTAAAAGGTTTAGTTGAGTAAAAAGGAGTTTTAATTCTTTTTACTGAAGGGAAGTTTTTAATTCCAATTGTAAAAGGTTTCGAAACGAGATTAAAGTTTAATGTAAAAGAAAAAATCTTTTTGTTAGTTAAAAAAAATTTTTTATAAAAGTTAAATTTTTAAAATAAAAAAGTGGGCTAGGGACTGGGGGGGGTGGTCGGTGGGAGGGGTTGGGGTTGGGGTTGGGGAGGCTTTTTAAATTAAAACGAAAAGGTTTTATAAAAGTTGAAGTTTTAGAAATAAAAATTTGAGGATGGAGGGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3750197

TAAGGGTGTGTTTGGTATGAAGGAAAATGTTTTCCATGGAGATTATTTTTCTAGAAAATGCTTTCCTGGAAAACAAGTAGATTTTGAACTTATTTTCTCATGTTTGGTTGGTGAGTAGAAAATATTTTCTGAAAATGATTTTTTGTGTTTGATTTATGAATGAAAAATATTTTTGAGGAACATCTTTTATTTTTTACTAAAGTAGAAAATAATTTATGAAATTGAAAATATTTTTTAAAAACATGGGGTAGTGTGGGGGCAGGGGGAGGGGTAGGAGTGAAAAAATAAAAATTTGAAGTTGATAGTATTTTTAAAAAGCAAAATTAATTTTTTGAGGGTGGGGGTGGGGTGGGGTGGCTGGCCCGGGGAGGGGGGGAGGTAGGAGTTTAAAAATAAAGATTTTGAAGTTGAAAATATTTTGGAAAAGCAAAATTAAATTTTTCGGAGGGGTTGGGGTTGGGGTTGGGGAGGGTGGCTGGTGGGGGGGGTCAGGGATCGGGTGAAAAAATAAAATTTTTAAATTGAAAATATTTTTTAAAAAAAATTGATTGTTTTTCTAAAAAAGAAAATGTAATTTGAAATTAGAGCAAAGCTTTGGAAAATGTTAACCTTAATTTTTGAAGGGAAGTCATTTTTCTTAATTTTGAGGAAAAATGAGTTGATTTGGAAAATTATTTTTCAAAATTTTTGCTCCAACCAAAATGAGAAAATTGAAAAACATGAGAAAATGTTTTTCTTCGTACCAAACACACTCTAA

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