Plant MITE

SE3750198

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11266
Solanum lycopersicum
SE3750198
PIF/harbinger
To1
SL2.40ch05:9958265-9958895
TTA
GGGCCCGTTTGACCATAGATTTTTCAAATA

Secondary structure and sequence

TSD TIR

5'

3'

TTA    --C                  T      ATATTTAGAAATT         A   -------     TGTCCATACAATTTGCCATTATTTGGAAAATATTTCAAATTTCTAGTTACTAATTTTTTCTAGTAGTTGGGTCAAATCTCATTATTTGGGATCTTTGAAAATTGAAATTTTACCTCAAACTTTTATATTTTACAAAAACACCCTATATAGTAATTATGAGTTGTATTACATAATTTTTTACATGAACAATAAAGTAGTGATGAAATATTCAGTCAATATTAAATGATGATATGGTTGTAGATGAAAATGATTACC
   GGGC   CGTTTGACCATAGATTTT CAAATA             TTTTTGGCG ATA       GTGTT                                                                                                                                                                                                                                                               
   ||||   |||||||||||||||||| ||||||             ||||||||| |||       |||||                                                                                                                                                                                                                                                                
   TTCG   GCAAACTGGTATCTAAAA GTTTAT             AAGAACCGT TAT       CCACT                                                                                                                                                                                                                                                               
  A    ATC                  -      -------------         G   AGTACAC     TTAAAGTGGAACACAAACCGGTATCATAAACTTTTTATATAAAATTAAAAAAATTTTTATACTAAATATGTGTATTCAAGAATTTTTGATAGTTTTGTTTAGTATTCGAACGTAATGTTCAGTTAACCTAGAAGCAACGTTGTTATTATTTATCACAAGTACTTTGATCTCGTTACACCATCAAACCTTACTCACGTTGTTTGTAGTAAGATATGTAGCACTTCATGTGTTTCGTGTACTGAAACAATGGGCTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3750198

TTAGGGCCCGTTTGACCATAGATTTTTCAAATAATATTTAGAAATTTTTTTGGCGAATAGTGTTTGTCCATACAATTTGCCATTATTTGGAAAATATTTCAAATTTCTAGTTACTAATTTTTTCTAGTAGTTGGGTCAAATCTCATTATTTGGGATCTTTGAAAATTGAAATTTTACCTCAAACTTTTATATTTTACAAAAACACCCTATATAGTAATTATGAGTTGTATTACATAATTTTTTACATGAACAATAAAGTAGTGATGAAATATTCAGTCAATATTAAATGATGATATGGTTGTAGATGAAAATGATTACCCATCGGGTAACAAAGTCATGTGCTTTGTGTACTTCACGATGTATAGAATGATGTTTGTTGCACTCATTCCAAACTACCACATTGCTCTAGTTTCATGAACACTATTTATTATTGTTGCAACGAAGATCCAATTGACTTGTAATGCAAGCTTATGATTTGTTTTGATAGTTTTTAAGAACTTATGTGTATAAATCATATTTTTAAAAAAATTAAAATATATTTTTCAAATACTATGGCCAAACACAAGGTGAAATTTCACCCACATGATATGTGCCAAGAATATTTGAAAATCTATGGTCAAACGCTAGCTTA

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