SE3720208

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11276
  • Solanum lycopersicum
  • SE3720208
  • Mutator
  • M3
  • SL2.40ch00:15999222-15999709
  • TTTAACTAA
  • G

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTAACTAAGA  AACT    CA   ---A       TAAATTTTATATTTGTATGTCATAACTATAGTTTGTCCAATTGCGTTTCATAACAAATTTTATGTTTGCTATGGAACTTTTGATTGTATAATCTCGCTACAAACATCTAATTTTAGACAAATTGCTCATTTTTGTATAAATTCATTTATACATTGTAATTTGTGTAATAAGACCTGTATTTGTATAATTACAAGTGTACAGGACAAAAATATAT
           GC    TTCG  TAT    GCATACA                                                                                                                                                                                                                      
           ||    ||||  |||    |||||||                                                                                                                                                                                                                       
           TT    TCCT  TTG    ATACTTT                                                                                                                                                                                                                      
     AATCAA  ----    --   TAAC       ATTGTTTAATAATTAAGTTTAATTTACGGTATAAGTATCAAATGAGAATAAAATTAAACGTCGTTTGTAAGGGAAAAAACGGTAGACTAAGCCATATATTAAACAGTAAAAGCTATATATGTTAATAAGTAAAATATGTAAAGTCATATTTTACATATTTTACGTAAATACAAACATATTTCGATCTCTTTTCACAAATATGTTTATGTTTATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3