SE3720209

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11277
  • Solanum lycopersicum
  • SE3720209
  • Mutator
  • M4
  • SL2.40ch02:49434937-49435635
  • ATAAATTTA
  • TAAATTTAGGGAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
A        -      -----     --  ATATA  CACTTAAAAATAATAAATTATTTTTTCCATAGCTATAGTTTGATAATTATAATTTCTATCTACATGTTACATGAAGAGGAGAGGCGAGTGAGACTGGGGGAGAGAGTAGAGAAGCGAGAGAGAGCGGGAAAAGAGTGGGAGAAAGGTGAATTATATATGTATATTGGTTAGATAACTGTATATTACACATACATATTTGTATATATGGAAAGATAGATTGGGAGAGGGAGGAGAGAGAAAAGCGAGAGCGAAATAGGGAGGAGAGAGGCGAGCGAGCGAGGGCAGAGAGTGGGAGAGAGGTGAATTGTATCTGTATATA
 TAAATTTA GGGAAA     CTTTC  AC     GC                                                                                                                                                                                                                                                                                                                               
 |||||||| ||||||     |||||  ||     ||                                                                                                                                                                                                                                                                                                                               A
 ATTTAAAT CCCTTT     CATTA  TC     GT                                                                                                                                                                                                                                                                                                                               
         A      TAATG     TT  -----  TTAAATATGATAAATTAATGAGTAGTATCAATATCAAACAATATTGATAGTGAGTGCTGATTGTAGTATGTAATTAATGTATCCGACTGAAGTTTAAACATATTAATCAGTACAAACATATACATATTAAGGGTCTTATATGTTTATGTATACATATTATACGTTAATAAATTGGATATATGTATATGTTAAATAGAGAGAGGGTGAGAAACGGGAGAGAGCAAGCGGAGAGAGAAGGGAGAGGGTTTAGAGCGAGTGGAGAGAGGAGGGAGAGGTTAGAGCGAACAGGATATATGTTTACATATACATATTATATGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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