SE3720213

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11281
  • Solanum lycopersicum
  • SE3720213
  • Mutator
  • M3
  • SL2.40ch11:47380487-47381107
  • AACAAAAAT
  • GACAATTTCATATATAACAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
  AACAAAAAT  C    TC     -       ----       ATCATATTTTTATGCAATAACTATAGTTTGCATAATTGTGCTTCATAAAAAACATAAATATGTATATTTTGTTGTACATATATAAAAGAAAACAATTGTACAATTCGTTTTTATTTCAGTATACATATACAAAAGATCAATTGTATAATATGTGTTTATATAAAGCGAAAAAGACAAAAGAAAACTGAATAAGGAAAGATCTTATTTGTATAATCATAAGTGTAAAGGACGAAAATATATGAATTTATATTTGTATATACCATTTTCTCT
           GA AATT  ATATA TAACAAA    CATAAAA                                                                                                                                                                                                                                                                              
           || ||||  ||||| |||||||    |||||||                                                                                                                                                                                                                                                                               
           CT TTAA  TATAT ATTGTTT    ATTAAAT                                                                                                                                                                                                                                                                              
TAAAAACAACC  T    CA     T       AATA       TTAATTTAATATATTTGTATCGAACTAAATGAACATAGATATCGTTTAACAACGAGAAAGCGGAGAAAGGCCCACTTAGAGCGGACGTCGGAGAGAGTAGAGAGAACGAATATATGTTAGTGTGTACATATTTTACGCAAACACAAACATATTTCACTCTCTTTTAATATATATATGTATATAAAAGCAAGGGGAAAGGGTCTAGAGCGAGCGGTGAGAGTGAAATATGTTTGAGTTTACATATGTAACGTAAACACAAACATATTTCAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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