SE3710214

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11282
  • Solanum lycopersicum
  • SE3710214
  • Tc1/Mariner
  • St1
  • SL2.40ch10:52041127-52041389
  • TA
  • TACTCCCTCCGTCCGGTATTGTTTGTCATG

Secondary structure and sequence

TSD    TIR
5'



3' 
                T             ------GT     TTTTTAGAGTCAAACTATAAAAACATTTACTAACATTTTAAGCTATATTTTTTCATCATATTAATATGCAAAAATTGCAATTTATAGTACT
TACTCCCTCCGTCCGG ATTGTTTGTCATG        TTCTA                                                                                           
|||||||||||||||| |||||||||||||        |||||                                                                                           T
ATGAGGGAGGCAGGCT TAACAAACAGTAC        AAACT                                                                                           
                T             AACGCGAA     TTCATTTAAACTGATTAAAAGTTTCAATTTATTCTAGTGTAATTAAGCTATAAAAATTGTTTTTTTAAATCTATAAGATTTTGATATATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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