Plant MITE

SE3710215

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11283
Solanum lycopersicum
SE3710215
Tc1/Mariner
St3
SL2.40ch05:29308727-29308979
TA
TACTCCCTCCGTTTCAAAAAGGATGACCT

Secondary structure and sequence

TSD TIR

5'

3'

                         A   ------  T     TTGGAACGAAGTTTAAGAAAAAAAAGAAGACTTTTTAATCTTGTGGTTCTAAATTAAAGTTATGTCAATTGTACCAAAGTGCCCTTT
TACTCCCTCCGTTTCAAAAAGGATG CCT      CG TTGAC                                                                                       
||||||||||||||||||||||||| |||      || |||||                                                                                        
ATGAGGGAGGCAAAGTTTTTCTTAC GGG      GA AAAAT                                                                                       
                         A   ATAAAG  -     CAAACAAAGTTTTTCTAACGGGGGAAAGGAAAAAACCATTATTAAATTGAAATTGAAAGGTGCACCGTACTAATTTTGGTGTTCTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710215

TACTCCCTCCGTTTCAAAAAGGATGACCTCGTTTGACTTGGAACGAAGTTTAAGAAAAAAAAGAAGACTTTTTAATCTTGTGGTTCTAAATTAAAGTTATGTCAATTGTACCAAAGTGCCCTTTAATCTTGTGGTTTTAATCATGCCACGTGGAAAGTTAAAGTTAAATTATTACCAAAAAAGGAAAGGGGGCAATCTTTTTGAAACAAACTAAAAAGGAAATAGGGACATTCTTTTTGAAACGGAGGGAGTA

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