SE3720216

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11284
  • Solanum lycopersicum
  • SE3720216
  • Mutator
  • M4
  • SL2.40ch10:985854-986520
  • ATAAAATAA
  • AGGGAAACT

Secondary structure and sequence

TSD    TIR
5'



3'
                  ATAAAATA   G     TTCA     A  CATTTAAAAATAA          TTC              --       CA     TA    -   GT   TAA  GG G GA   -  --G    A   AGAGAGAGGAGGGGGGGAAAGAG   AAAG  AAA             TTGGTTAGATAAT         TACATATGTAATTGTATATATGACAAGAGATATTGGGAGAGGTAGGAGAGAGGCGAGCGAGACTGGAGAGAGAGGCGAGAGGCGAGAGAGAGAGGGTAGAGAGTGGGAGAGAGGTGAATTGTATTTGTATATAGTTGTGTACAATTGTATATA
                          AGG AAACT    CATAT GT             TTAATTACTC   GTAGTTATAGTTTG  ATAATTA  ATTCG  GCTA CAT  TAT   GA  A A  GGC GA   CGAG TTG                       TAG    GT   TTGTATATGTATA             TGTATATTA                                                                                                                                                         
                          ||| |||||    ||||| ||             ||||||||||   ||||||||||||||  |||||||  |||||  |||| |||  |||   ||  | |  ||| ||   |||| |||                       |||    ||   |||||||||||||             |||||||||                                                                                                                                                         A
                          TTC TTTGA    GTATA TA             AATTAATGAG   TATCGATATCAAAC  TATTAAT  TGAGT  TGAT GTA  ATG   TT  T T  CCG CT   GCTC AAC                       ATC    CA   AACATATACATAT             TAAGTGGAC                                                                                                                                                         
AAGAAAATACCTTTTTAATGCGCCTA   G     ----     A  -------------          TAC              GA       AG     GC    T   AT   TAA  AA G AC   A  GAA    A   -----------------ATATTA   AGTA  ---             -------------         TTATATGTTCATTTATACATATGATATGTTTAAAATCGGATATATGTATATGTTAAGTGTAGAGAGGGTGAGAGAAGGGAGAGAGCGAATGGAGAGAGGAGGGAGAGGGTTAGAGCGAACAGTAAATATGTTTACATATACATATTATATGTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End