SE3740219

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11287
  • Solanum lycopersicum
  • SE3740219
  • CACTA
  • Ca1
  • SL2.40ch01:79424123-79424582
  • TAA
  • ACACTTTGTTTGGATCATTGTTACCCATTGT

Secondary structure and sequence

TSD    TIR
5'



3'
TA     T                 C       TTCATAA             -AC       TATT    GATAGATACAATTTTTGGCTAGACTGTATTGTTTGTTGTTGTTTAGCAACATTTTAATTGTTTGGTTTGATCGTATCGTACTGTATTGTAATTTATATATTTACTAAAATATCCTTAATTATTCTAGGGTAGGAGGTTTTGACTAGATTTAAATAATTAAGAGT
  ACACT TGTTTGGATCATTGTTA CCATTGT       TGTATTGTATTGT   TGTACTT    GTAT                                                                                                                                                                    
  ||||| ||||||||||||||||| |||||||       |||||||||||||   |||||||    ||||                                                                                                                                                                     
  TGTGA ACAAACTTAGTAACAAT GGTAACA       ACATAACATAGCA   ATATGGA    TGTT                                                                                                                                                                    
AA     T                 A       -----TA             ATA       ----    CCAAACAAAACTAACAATTAATTTTACATAACATAACAATTTAAAGTAACAATGCATTGTTACTTTTGGGGATAAAATACCTTGTTGGTTAAACCACACAAGTGTAACAATGAATTAAAGAAAAAGATCAATATATAAATGTATTATAAAGTTTTATAATAAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End