SE3710222

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11290
  • Solanum lycopersicum
  • SE3710222
  • Tc1/Mariner
  • St1
  • SL2.40ch08:55531809-55532074
  • TA
  • TACTCCCTCAGTCCGGTATTGTCTGTCATG

Secondary structure and sequence

TSD    TIR
5'



3' 
        CA  C   T     C       -----AT     TTTTTAGAGTTATAACTATAAAAACTTTGACTAACATTTTAATATGTATTTTTTTAATCATATTAATATGCAAAAAATTGTAATTTATAGTAC
TACTCCCT  GT CGG ATTGT TGTCATG       TTCTA                                                                                             
||||||||  || ||| ||||| |||||||       |||||                                                                                             T
ATGAGGGA  CA GCT TAACA ACAGTAC       ATAGC                                                                                             
        AA  A   T     A       AATGCGA     TTTCAATTAAACTGATTAAAAGTTTCTATTTAATCTAGTGTAATTAAGCTATAAAATTTATTTTTTTTAATCTGTAAGATTTTGATATACCTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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