Plant MITE

SE3750224

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11292
Solanum lycopersicum
SE3750224
PIF/harbinger
To4
SL2.40ch05:15267323-15267718
TTA
AGAGCCTGTTTGG

Secondary structure and sequence

TSD TIR

5'

3'

TT  A          CTCA      ---A    -     AACTGACTTAAAAGCTGGTTTTTGACTTATTTAGGTGTTTGGCAATACTCAAAATAACTTATTTTAAGTTAAAAATAAAATCAAAAGTTAAAAGCTGGGGTAGGGGTGTTTTTTTTAGCTTATAAGCTGTTTTAAGTTGACCACATTTTTATCTTTTTGCT
  AG GCCTGTTTGG    GCTTAA    AGCT GGTCA                                                                                                                                                                 
  || ||||||||||    ||||||    |||| |||||                                                                                                                                                                  
  TC CGGGCAAACC    CGAATT    TCGT GAAAT                                                                                                                                                                 
AT  C          TACC      ATTT    C     TTTTTCATTAAAATTTTCACGACTTTGAATAAAAATTTTATTCATCAATACGCAAACCTATTTTCACGACTTCAACAATACAGTTTGTACTTTTCCCTTTTTACCTTCTTTCTTTACAATCTCAATGTACCCATTAAACCTTTAACACATTTTTATAATTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3750224

TTAGAGCCTGTTTGGCTCAGCTTAAAAGCTGGTCAAACTGACTTAAAAGCTGGTTTTTGACTTATTTAGGTGTTTGGCAATACTCAAAATAACTTATTTTAAGTTAAAAATAAAATCAAAAGTTAAAAGCTGGGGTAGGGGTGTTTTTTTTAGCTTATAAGCTGTTTTAAGTTGACCACATTTTTATCTTTTTGCTCTTAATATTTTTACACAATTTCCAAATTACCCATGTAACTCTAACATTTCTTTCTTCCATTTTTCCCTTTTCATGTTTGACATAACAACTTCAGCACTTTTATCCAAACGCATAACTACTTATTTTAAAAATAAGTTTCAGCACTTTTAAAATTACTTTTTTAAAGCTGCTTTTATTAAGCCCATCCAAACGGGCCCTTA

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