SE3720225

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11293
  • Solanum lycopersicum
  • SE3720225
  • Mutator
  • M9
  • SL2.40ch07:7458905-7459218
  • TTTATTTTT
  • GGCATAATACATAAATATGCCTT

Secondary structure and sequence

TSD    TIR
5'



3'
TTTATTTTT             A  A  -    TTAAC    TC      -CAC    A  T    -      AG  T   C       G      A    TGTATAAAG     C      T   TTAT          T  TTTTTTGTCC       TG
         GGCATAATACATA AT TG CCTT     TTGG  TCGAAT    ATTT TG CCTT CAACTT  GT ATG ACAAGTA ACACTT AACT         TTGAA AAATAG CAC    GTCCTACATG CA          TATGTGG  
         ||||||||||||| || || ||||     ||||  ||||||    |||| || |||| ||||||  || ||| ||||||| |||||| ||||         ||||| |||||| |||    |||||||||| ||          |||||||   
         CCGTATTATGTAT TA AC GGGA     AACT  AGTTTA    TGAA AC GGAA GTTGAA  TA TAC TGTTTGT TGTGAA TTGA         AATTT TTTATT GTG    CAGGATGTAC GT          GTGCATC  
TTTTTATTT             A  A  T    -TTTA    GA      AAAT    -  T    A      AG  T   A       A      A    TAGGTTGAA     A      T   TACT          T  -----TTTAT       CT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End