SE3720228

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11296
  • Solanum lycopersicum
  • SE3720228
  • Mutator
  • M5
  • SL2.40ch12:11313384-11313693
  • TAAAAAATA
  • GGGAAAAAG

Secondary structure and sequence

TSD    TIR
5'



3'
TAAAAAATA         -ATCA    A      C  C       T    ---          G    C   AT    -AA     T     ---AA           T                   T   C    A      --C    C    -   AA
         GGGAAAAAG     GAAA ATATTT AA TTTGGCT AAAT   TGTTACGATA CAAA TTT  GAAA   CTTTT ACCCT     ACTATTTAATA TGTATTTTAAAGGTATATA GTG CCAC TGGACA   AATA TATT TAT  
         |||||||||     |||| |||||| || ||||||| ||||   |||||||||| |||| |||  ||||   ||||| |||||     ||||||||||| ||||||||||||||||||| ||| |||| ||||||   |||| |||| |||   
         TCCTTTTTC     CTTT TATAAG TT AAACTGG TTTA   ACAATGCTAT GTTT AAA  CTTT   GGAAA TGGGA     TGATAAATTAT ACATAAAATTTCCATATAT CAC GGTG ACTTGT   TTAT ATAA GTA  
 ATAAAAAA         CGAAA    A      C  A       C    ATA          G    -   AC    CCC     T     GTACG           C                   T   A    C      ATT    -    C   TT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End