SE3750235

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11303
  • Solanum lycopersicum
  • SE3750235
  • PIF/harbinger
  • To1
  • SL2.40ch09:58778383-58779047
  • TAA
  • GGCCCGTTTGGCCATAAATTTTTCAAATAATATTTGGGAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAG   --C            AAT          A    T       -----ATTTA      AATGTTTGTCCATACAATTTGTCATTATTTGGCAAATATTTTTGGCAAATATCCCAAATTTCCAAATACTAGTTTTTTCTAGTATTTGGGTCAAATCTCATTATTTGGGATATTTTGAAAATTTTAAATTTTACCCCAATCTTTTATCTTTTACAAAAACACCCTCTTTAGTAGTTGCTTGCGTTGTATTACATAATTTTTTACGTGAATACCAAAATAGTGATGAAATATTTAGTGAATATTAAATAATGATATAATTGTTGATGAAAATTAT
    GGC   CGTTTGGCCATA   TTTTCAAATA TATT GGGAAAT          GCAAAT                                                                                                                                                                                                                                                                                  
    |||   ||||||||||||   |||||||||| |||| |||||||          ||||||                                                                                                                                                                                                                                                                                   
    TCG   GCAAACCGGTAT   AAAAGTTTAT ATAA CCTTTTA          ACTTTT                                                                                                                                                                                                                                                                                  
  AA   ATC            -CT          A    -       CAATAAACTC      AAACCTACTTTAAAGTGGTACACAAACCGGTATCCTAAACCCTTTATATAAAGTGGAAAAATCTTTTTATACTAAATATATATGTTCAAAATTTTTGATAGTTTTGATTGATTTTCAAACATAATGTTCAGTTAACCTACAAGCAATGTTGTTATTGTTTATCACAGGTACTGTGATTTCGTTACATCATTAAACCTCACTCACGTTGTTCTTAATAAGGTATGTAGCACTTCATCTGTTTCATGTACTGAAACAATGGATCTCGGTTAAAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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