SE3720236

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11304
  • Solanum lycopersicum
  • SE3720236
  • Mutator
  • M7
  • SL2.40ch02:43696458-43696821
  • TTAAATTTA
  • TAAATTTAGAAAAAATGACAGAAATTACACTTTTAAG

Secondary structure and sequence

TSD    TIR
5'



3'
T         -AAA      C          --C       TTCTCTT         A  -    -  T     -----    --TA     AAAATCCCT      C    --  CAA      --G ATCA -  -- AT  -A  TAATGTATCTCGCGCATCAGATTAGTGTATCATGTATAAAATGTACATCAAATTA
 TAAATTTAG    AAATGA AGAAATTACA   TTTTAAG       ATTACCATT TG CCCT AT AGTTT     TACA    TCCCT         CATTTT ATGC  AT   ATTAAT   T    G CG  T  GA  AT                                                       
 |||||||||    |||||| ||||||||||   |||||||       ||||||||| || |||| || |||||     ||||    |||||         |||||| ||||  ||   ||||||   |    | ||  |  ||  ||                                                       G
 ATTTAAATT    TTTACT TTTTTAGTGT   AAAATTC       TAATGGTAA AC GGGA TA TCAAA     ATGT    AGGGA         GTTTGA TTAT  TA   TTATAT   T    G CT  T  TA  TA                                                       
          CCCG      A          ATA       --CGTTT         -  A    A  T     TATTA    CTAA     ---------      -    TT  ---      TCG ---- A  AT --  AT  GAATACACGCTCTATGTAATCAGCAATTCTATGTAATGTAAACTATGTACTATGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End