Plant MITE

SE3740240

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11308
Solanum lycopersicum
SE3740240
CACTA
Ca2
SL2.40ch08:49790480-49790703
TTT
CACTATATCAAAAATGATTATTAGTGGCAATTAAT

Secondary structure and sequence

TSD TIR

5'

3'

TTT  C    T     A     A           T   TAAC    ----ATAGC   -   A        TATGTATTTTTAGCGGCAATTAACACTCTTTGTATATGTCCCTAA
   CA TATA CAAAA TGATT TTAGTGGCAAT AAT    GATA         TTA ATT CCGCTAAA                                             
   || |||| ||||| ||||| ||||||||||| |||    ||||         ||| ||| ||||||||                                              
   GT ATAT GTTTT ATTGA AATCACCGTTA TTA    CTGT         ACA GAT TTCAGAAA                                             
TTT  T    T     -     A           T   -TAC    ATTTATTTC   T   -        CGGCTGTAATCAATTGACAGTAATCTTAGTTACAGCGATTTTTGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3740240

TTTCACTATATCAAAAATGATTATTAGTGGCAATTAATTAACGATAATAGCTTAATTACCGCTAAATATGTATTTTTAGCGGCAATTAACACTCTTTGTATATGTCCCTAAAGTTTTTAGCGACATTGATTCTAATGACAGTTAACTAATGTCGGCAAAGACTTTAGTACACTTTATTTATGTCCATATTTATTGCCACTAAAAGTTATTTTGTTATATTGTTT

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