SE3720243

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11311
  • Solanum lycopersicum
  • SE3720243
  • Mutator
  • M2
  • SL2.40ch05:6943448-6943747
  • AATTAATTA
  • AATTAATTAGGGATAATGCACAAGTACTCTCTCAATCTATGTCCGAAATCTCAGAGACACATTTATACTATACTAAGGTTCGATTACCCCTGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
         A    T                  C   C                       A      C             G    C  C    CTTATTTTATT     TATTCTATTCCTTTTTGGCCTACGTGAAACTATCTTGTAGGCCC
 AATTAATT GGGA AATGCACAAGTACTCTCT AAT TATGTCCGAAATCTCAGAGACAC TTTATA TATACTAAGGTTC ATTA CC TGAA           GATAG                                            
 |||||||| |||| |||||||||||||||||| ||| ||||||||||||||||||||||| |||||| ||||||||||||| |||| || ||||           |||||                                            A
 TTAATTAA CCCT TTACGTGTTCATGAGAGA TTA ATACAGGTTTTAGAGTCTCTGTG GAATAT ATATGATTCTAGG TAAT GG ACTT           GGAAA                                            
A        -    T                  A   A                       C      A             A    A  T    ---------AG     AGCCGAATGCGCCGTGATCAAACTTTCTTTTTCAGTTGGTCGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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