SE3720244

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11312
  • Solanum lycopersicum
  • SE3720244
  • Mutator
  • M6
  • SL2.40ch09:8808680-8809365
  • TTTTTAATA
  • A

Secondary structure and sequence

TSD    TIR
5'



3' 
   TTTTTAAT  --    AATCGTATAGAA   ---      AATAATATAAA         GTAGCTACCGTTTGATATATTTGTGTTTCACAGCAAGCTGTTTGTCAGTCCCTCTCTCCCTCATATTCTCGATCTCCACTCTCCTTCTCTCGCTCGCTTCTTTCGCTCACCTCTCTCGCTTTATACAATAGAAAAGTATAAATTGTGTTTCTAATTGTATAAAGCGAGAGAAAATTGTATATACACATGCAGATACATATATCTCTGTCTTATACACTTATAATTATACAATGAAAGTACTTCCCTGCCCAAGTCCCTTTTGTCTTTCTCTCTTTCTCGTTTTATACAAATTCCA
           AG  GGAT            TGA   CAAGCT           ATAAATATA                                                                                                                                                                                                                                                                                                       
           ||  ||||            |||   ||||||           |||||||||                                                                                                                                                                                                                                                                                                       A
           CG  GAAA            GTG   ACTATT           TGTATTTTA                                                                                                                                                                                                                                                                                                       
ATAATTTTTCC  TT    ------------   TAT      -----------         AATATAAACATACAATATGGTTTTAAACATATTAACGCGAGGTATCGTTTGTATATATGTTAACTTCGCTTAATATATTTTGCTTCACATATTTTGTTCTTTCTCTTTCTCTGAACTCGTTTTTTAACATATTTTGCTTCATATATTTTGTTTAACAATTAATGTTCACATATCCTGCTAATATATGTTAAACATAAACATATTTTGCTCTTTTCCTCTTTCTGTTTTCTCTGAACCTATCCCTTATAAGTTAACTTAGCTTAACATATTTTGCTCTTTCTCTCTAATATATGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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