SE3720245

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11313
  • Solanum lycopersicum
  • SE3720245
  • Mutator
  • M6
  • SL2.40ch10:62103415-62104106
  • AAAAATTAA
  • G

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAAATTAAG     A -------     - -----         AC GATAAATCAAATTAAATGCTATAACCACACTTTAATTTAATTGTACTTTGTAGGAAACTGTTTGTCGTCACCTCTCTCCTTCAAACTCTTGCTTGCCACTCTCCCTTTCTCGCTCGCTCCCTCTCACTTTTATACAAACACAAGTGTATAAAATGTGTTTCTGTTTGTATAAAGCGAGAAAAAAATTATATAGATATACATATATTTTCGTTCCCCTCTCTCCCCTCTGCTAGATCTCGCTTGCCCTTCTCTCAGATCTCGCTTGCCACCCTCGCCTCTATCACTTATACAAACAGAAACGAAATGTATA
          GGGAA T       TGTAT A     TAATTGTAA  T                                                                                                                                                                                                                                                                                                                      
          ||||| |       ||||| |     |||||||||  |                                                                                                                                                                                                                                                                                                                       
          TTAAA A       GAAAG G     TGTTTGTAT  T                                                                                                                                                                                                                                                                                                                      
        AA     - ACTTATT     T TATAT         -- TTAAATATAAACATACGATGTCGTTTCAAATGTATTAACGCGAAGTATCTTTTGTATTTATACATATTAAAAGATATGTATATGTTTATTTGGTTAACATATTAAGCGATACGTATATGTTTTCTTTCGTTAACACATGTTTAATTAACCTATTAAACACATAGATATTTTTCTCTTTCTCTCTTTCTGTTTTCTTTTGACCCGTACCCTTATAAACATAATATATTAATATTCACATATCCTGCTTTTATATACATAAACGTTCACATATATGTTAAAAGAGAGTGAAATATGTTTGTCTTTGTGTCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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