SE3720249

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11317
  • Solanum lycopersicum
  • SE3720249
  • Mutator
  • M4
  • SL2.40ch10:25577020-25577729
  • ATTATTTTT
  • TGGGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTATTTT      -----AATAAC       AGCAAACTTATACTACTTAATTACTCATCATAGCTATAGTTTGCTATAATTACCACTCACGACTAACATTATACACTAATTATGTGGGCTGATTTTGAGTTTGTATAATTAGTCACATTTGTATATATATAATTCGCCAGAATATACAAATACATTTGTATAATATACAATTATTTAATCAATATACATATACAAGTTACCACTACGATCTCTCTCGCTTGCCTCTCTCATCCCTCTCTCAATCTCGTTCACCTCTCTCATCTCTCTCTCAATCTCACTTGCATTTTTTTACAAATACATATGTATAATATACAATTATCTAACC
        TGGGAA           GTGGTTA                                                                                                                                                                                                                                                                                                                                     
        ||||||           |||||||                                                                                                                                                                                                                                                                                                                                     A
        ACCCTT           TCGATGA                                                                                                                                                                                                                                                                                                                                     
TTTTTATT      AAAAGTATATA       TTTTTATCGGATTAATAAAAAGTATCGATATCAAACTATTGATGTTAAACATTGATGTACAATATCCCTCTTCTCTCCGCTCGCTCTAACCCTCTCTCTCCTCTCTCCCGTTTTCACTCTCTCTGCATTTAACGTATACATATAACAAATATATTAATATATAATATGTATACGTAAATATATATATCGTTCGCTCTAACTCTCTTTCTCTCTCTCCTCTCTCACCTCACTGTAACCCTCTCCCTCCTCTCACCGCTCGCTCTAACCCTCTCTCCACTCGCCCTCTCTCGTCTTTCACCCTCTCTCCACTTAACATATACATATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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