Plant MITE

SE3750253

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11321
Solanum lycopersicum
SE3750253
PIF/harbinger
To1
SL2.40ch04:59037797-59038447
TTA
GGGCCCGTTTGGCCATAAATTTTCCAAATAATATTTGGGAAAAATTTGG

Secondary structure and sequence

TSD TIR

5'

3'

TTA    --C            AAT          A       G   ---A      ----CAAATAA     GTCCATACAATTTGTCATTATTTGGCAAATATCCCAAATTTTCAAATACTAGTTTTTTCTAGTATTTGGGCCAAATATCATTATTTGGGATATTTTAAAAATTAAAATTCTATCCCAATCTTTTATCTTTTACAAAAACACCCTCTCTAGTAGTTGCTTGCGTTGTATTATATCATTTTTTACGTGAACACCAAAATAGTGATGAAATATTTAGTGAATATTAGATAATGATATGATTGTTGATGAAAAATATTAAAAA
   GGGC   CGTTTGGCCATA   TTTCCAAATA TATTTGG AAA    ATTTGG           TGTTT                                                                                                                                                                                                                                                                   
   ||||   ||||||||||||   |||||||||| ||||||| |||    ||||||           |||||                                                                                                                                                                                                                                                                    
   TTCG   GCAAACCGGTAT   AAAGGTTTAT ATGAACC TTT    TAAACT           CCACT                                                                                                                                                                                                                                                                   
  A    ATC            -CT          -       G   ATAA      CACTTTTAAAC     TTAAAGTGGTACACAAACCGGTATTTTAAACCCTTTATATAAAGTGGAAAAATCTTTTTATACTAAATATGTGTGTTCAAAATTTTTGATAGTTTTGATTGATTTTCAAACATAATGTTCAGTTAACTTACAATCAATGTTGTTATTGTTTATTACAGGCACTGTGACTTCGTTACACTATTAAACCTCACTCACGTTGTTCTTAATAAAGTATGTAGTACTTCATCTATTTCATGTACTGAAACAATGGATTTCGGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3750253

TTAGGGCCCGTTTGGCCATAAATTTTCCAAATAATATTTGGGAAAAATTTGGCAAATAATGTTTGTCCATACAATTTGTCATTATTTGGCAAATATCCCAAATTTTCAAATACTAGTTTTTTCTAGTATTTGGGCCAAATATCATTATTTGGGATATTTTAAAAATTAAAATTCTATCCCAATCTTTTATCTTTTACAAAAACACCCTCTCTAGTAGTTGCTTGCGTTGTATTATATCATTTTTTACGTGAACACCAAAATAGTGATGAAATATTTAGTGAATATTAGATAATGATATGATTGTTGATGAAAAATATTAAAAATTGGCTTTAGGTAACAAAGTCATGTACTTTATCTACTTCATGATGTATGAAATAATTCTTGTTGCACTCACTCCAAATTATCACATTGCTTCAGTGTCACGGACATTATTTGTTATTGTTGTAACTAACATTCAATTGACTTGTAATACAAACTTTTAGTTAGTTTTGATAGTTTTTAAAACTTGTGTGTATAAATCATATTTTTCTAAAAAGGTGAAATATATTTCCCAAATTTTATGGCCAAACACATGGTGAAATTTCACCCAAATTTTCACTCAAATAATATTTGCCAAGTATATTTGGAAATCTATGGCCAAACGCTAGCTTA

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