SE3710255

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11323
  • Solanum lycopersicum
  • SE3710255
  • Tc1/Mariner
  • St3
  • SL2.40ch08:43861984-43862235
  • TA
  • TACTCCCTCCGTTTAAAAAGGATGACCTAGTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
        C    -           A  ------------       AATTGCAAC   G T    AAAAGAAAGAAGACTTTTTAATCTTGTGGTTCTAAATTAAAGTTATATCAAATGTACCAAAATGTCTTTT
TACTCCCT CGTT TAAAAAGGATG CC            TAGTTTG         GAA T TAAG                                                                      
|||||||| |||| ||||||||||| ||            |||||||         ||| | ||||                                                                      A
ATGAGGGA GCAA GTTTTTCTTAC GG            ATCAAAC         TTT T TCCT                                                                      
        A    A           A  TATAAAGAAAAA       ------AAA   - -    TACTAGGGAAAGGAAAAAATAATTGTAAAATTGAAATTGAAAGGTGCACTGTACAAATTTTGGTGTTCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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