SE3720256

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11324
  • Solanum lycopersicum
  • SE3720256
  • Mutator
  • M4
  • SL2.40ch07:5190187-5190906
  • TAAAAGATA
  • TAGGGAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAAGA        --ATT       T    AAATTTATACTATTTAATTACTCATC --    TATAGTTTGCTATAATTACCACTCGCGACTAACATTATACGTTAATTACGTGGGCTGACATCGAGTTTGTATAATTAGTCATGTTTGTATATGTATAATTCGCCAGGATATACAATAAATATGTATAATATATAATTCTTATATACATATGCAATTCACCTCTCTCCCACTTTCTGCCCTCTCTCGCTTGCCTCTCTCCTCCCTCTCTCAATCTCGCTCGCCTCTCTCCTCACTCTCCCAATCTCGCTTGCCATTTATACAAATTTATATGTATAATATACAGTTATATACAATTATATACATATATAAT
       TAGGGAAA     AGGCGGA AAGA                          A  TAGC                                                                                                                                                                                                                                                                                                                      
       ||||||||     ||||||| ||||                          |  ||||                                                                                                                                                                                                                                                                                                                      T
       ATCCCTTT     TGTATAT CGAT                          G  TTTT                                                                                                                                                                                                                                                                                                                      
AAAGAAA        GAAAG       -    -------------------------- AA    TATTAACTAATGAGAGATATTGATATCAAATTATTAATGTTAAATATCGATGTACAATAAACCTCCTCTCTCCGCTCGCTATGACCCTCTCTCTCCTCTCTTCACTCTCTTTCCGCCTTTTCTCACCCTCTTTCCACTTAACATGTACGTATAACCAATCTATTAACATATAATATGTTTACATTAACATATATACCTTTCTCTCTAGCCCTCTCCCTCCTCTCTCCGCTAGTTCTGACTCTCTCTTCTCTCTCTCGGTTCGCTCTAACTCTCTCCACTCGCTATCTCCTGTCTCTCACCCTGTATCCAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3