Plant MITE

SE3720263

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11331
Solanum lycopersicum
SE3720263
Mutator
M2
SL2.40ch05:62924058-62924380
TATTTTATA
ATAGGGAAAATGCACAATTACCCTCTTAACCTAAGACCGAAATCCCAGAGAAACACTTATACTATACTAAGGTCCTATAACCCCCTTGAACTTATTTTAGAAGTAATTTTCTACCTCTTTTCGCCTACGTGACACTATTTT

Secondary structure and sequence

TSD TIR

5'

3'

TATTTT       A         T     T         A A        C      AAC            C           A     CT             GA            -   C      -        A         TAAAAAAAAA  -CAA   AC
      ATAGGGA AATGCACAA TACCC CTTAACCTA G CCGAAATC CAGAGA   ACTTATACTATA TAAGGTCCTAT ACCCC  TGAACTTATTTTA  AGTAATTTTCTA CCT TTTTCG CCTACGTG CACTATTTT          GT    CCA  
      ||||||| ||||||||| ||||| ||||||||| | |||||||| ||||||   |||||||||||| ||||||||||| |||||  |||||||||||||  |||||||||||| ||| |||||| |||||||| |||||||||          ||    |||   
      TATCCCT TTACGTGTT ATGGG GAGTTGGAT C GGCTTTAG GTCTCT   TGAATATGATAT ATTCCAGGATA TGGGG  ACTTGAATAAAAT  TTATTAAAAGAT GGA AAAAGC GGATGCAC GTGATAAAA          CA    GGT  
ATATTT       A         C     -         A G        A      GTA            A           A     --             AA            A   -      C        C         ----------  CCCA   AA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720263

TATTTTATAGGGAAAATGCACAATTACCCTCTTAACCTAAGACCGAAATCCCAGAGAAACACTTATACTATACTAAGGTCCTATAACCCCCTTGAACTTATTTTAGAAGTAATTTTCTACCTCTTTTCGCCTACGTGACACTATTTTTAAAAAAAAAGTCAACCAACAATGGACCCACAAAATAGTGCCACGTAGGCCGAAAAAGGATAGAAAATTATTAATAAAATAAGTTCAGGGGTAATAGGACCTTAATATAGTATAAGTATGTCTCTGAGATTTCGGGCATAGGTTGAGGGGTACTTGTGCATTATCCCTATTTTATA

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