SE3720264

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11332
  • Solanum lycopersicum
  • SE3720264
  • Mutator
  • M2
  • SL2.40ch10:4425690-4425991
  • TAAACAATA
  • TAGGGAAAATACCCAAGTACCCCCTCAACCTATGCCCGAAATCCCAGAGAAACACTTATACTATACTAAGGTCCTATTACCCCCCTGAACTTATTTTATATGTAATTTTCTACCCCTTTTTAGCCTACGTGGCACT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAACAA      A   A                       C        C      A                                                AT   A    C   C     TTA     --C    --C   AGTTCGA
       TAGGGA AAT CCCAAGTACCCCCTCAACCTATG CCGAAATC CAGAGA ACACTTATACTATACTAAGGTCCTATTACCCCCCTGAACTTATTTTAT  GTA TTTT TAC CCTTT   GCCTA   GTGG   ACT       
       |||||| ||| ||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||| ||| |||||   |||||   ||||   |||        
       ATCCCT TTA GGGTTCATGGGGGAGTTGGATAC GGCTTTAG GTCTCT TGTGAATATGATATGATTCCAGGATAATGGGGGGACTTGAATAAAATA  TAT AAAA ATG GGAAA   CGGGT   TACC   TGA       
ATAACAA      A   C                       A        A      G                                                AT   A    A   T     --C     TGT    AAC   AAAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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