Plant MITE

SE3710265

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11333
Solanum lycopersicum
SE3710265
Tc1/Mariner
St1
SL2.40ch01:2794323-2794585
TA
TACTCCCTCCGTCGGTATTATTTGTCATG

Secondary structure and sequence

TSD TIR

5'

3'

     C       G -  TTA         ----- T  CTATTTTTAGAATCAAAATATAAAAACTTTGAATAACATTTTAAGATGCATTTTTTCATCATATTAAAATGCAAAAAAAATTGTAATTTATAGTAC
TACTC CTCCGTC G TA   TTTGTCATG     G TT                                                                                                
||||| ||||||| | ||   |||||||||     | ||                                                                                                 
ATGAG GAGGCAG C GT   AAACAGTAC     G AA                                                                                                
     A       G T  TAC         AACAC -  TATCTTTCACTTAAACTTATTAAAAGTTTCCATTTAATTTAGTGTAATTAAGCTATAAAACTATTTTTTTAATCTATAAGATTTTGATATAGTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710265

TACTCCCTCCGTCGGTATTATTTGTCATGGTTTCTATTTTTAGAATCAAAATATAAAAACTTTGAATAACATTTTAAGATGCATTTTTTCATCATATTAAAATGCAAAAAAAATTGTAATTTATAGTACTTTTGATATAGTTTTAGAATATCTAATTTTTTTATCAAAATATCGAATTAATGTGATTTAATTTACCTTTGAAAATTATTCAAATTCACTTTCTATAAGCACAACATGACAAACATTGTCGGACGGAGAGAGTA

Copy Cancel