Plant MITE

SE3720268

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11336
Solanum lycopersicum
SE3720268
Mutator
M2
SL2.40ch09:57500494-57500793
TTTAAAATA
TTTAAAATAGGGAAAATGCACAAGTACCCCCTCAATCTATGCTCGAATTCTCATAGACACACTTATACTATACTAAGGTCCTATTACCCCCTGAACTTATTTTATAAGTAATTTTCTACCCCTTTTCAGTCTACGTGCCAGCATTGAG

Secondary structure and sequence

TSD TIR

5'

3'

        AAT     A            C     C              T     T       C       A                                   A             C       A         C  GC   GA CC
   TTTAA   AGGGA AATGCACAAGTA CCCCT AATCTATGCTCGAA TCTCA AGACACA TTATACT TACTAAGGTCCTATTACCCCCTGAACTTATTTTAT AGTAATTTTCTAC CCTTTTC GTCTACGTG CA  ATT  G  
   |||||   ||||| |||||||||||| ||||| |||||||||||||| ||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| ||  |||  |   
   AAATT   TCCCT TTACGTGTTCAT GGGGA TTGGATACGGGCTT AGAGT TCTGTGT AATATGA ATGATTCCAGGATAATGGGGGATTTGAATAAAATG TCATTAAAAGATG GGAAAAG CGGATGCAC GT  TAG  C  
ATA     ---     A            A     A              T     C       A       A                                   A             T       C         A  GA   AA AT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720268

TTTAAAATAGGGAAAATGCACAAGTACCCCCTCAATCTATGCTCGAATTCTCATAGACACACTTATACTATACTAAGGTCCTATTACCCCCTGAACTTATTTTATAAGTAATTTTCTACCCCTTTTCAGTCTACGTGCCAGCATTGAGCCTACAAGATAGTGACACGTAGGCCGAAAAGGTGTAGAAAATTACTAGTAAAATAAGTTTAGGGGGTAATAGGACCTTAGTAAAGTATAAATGTGTCTCTGAGATTTCGGGCATAGGTTAAGGGGATACTTGTGCATTATCCCTTTAAAATA

Copy Cancel