SE3720270

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11338
  • Solanum lycopersicum
  • SE3720270
  • Mutator
  • M6
  • SL2.40ch02:30438255-30438920
  • TATTTTCAA
  • A

Secondary structure and sequence

TSD    TIR
5'



3' 
TATTTTCAAGAAC       AC -----------     C    ----- CAAAATTCATATTTGTATTTTATATCAAAGTTTGCATAATTGCGCTCCATAGCAAACATGAATACGTATAATTCGCTATACATATACAAAGAAACCAATTTCATAATTCGCTATACATATACAAAAGAAAGAGTTGTATATAAATCAATTGTACAATGTGTGTATGTATAAAACGAGAAAGAGAGAAAGACAAGAAAATTGGGCAGGGGAATATGTGTGTTTTGTATAATTATAAGTGTATAGGACGAAGATATGTGTATTTGCAAGTGTATATACAATTTTCTCTCACTTTAT
             AACTTTC  A           TATAG ATAC     A                                                                                                                                                                                                                                                                                                      
             |||||||  |           ||||| ||||     |                                                                                                                                                                                                                                                                                                      A
             TCCCTTT  T           CCATT GATT     G                                                                                                                                                                                                                                                                                                      
     AATTTTTA       -- AACATATATTA     T    ATTTA TTTAATTTACGATATTAGTGTAAAATTAAATTAACATGGGATATCGTTTGACAAACAGTCAGTGGAGAGAGGGAATTTGAGAGCGAACGGTGAGAGGGAGATAGCAAGCGAAAGAGAGTGAAAACATGTTTGTGTTCACATATTTTATACAAAGACAAACATATTTCGCTCTTTTTTAACATATATATGTATATAAAAGCAAGGAAAGAGAGGGGAGAGGGTCTAGAGCGAGCGGTGGGAGTAAGATAGGGAATAGGTTTGTTTTTGCTTTACATATTTAACACAAAGACAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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