SE3720273

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11341
  • Solanum lycopersicum
  • SE3720273
  • Mutator
  • M4
  • SL2.40ch10:59963817-59964518
  • ATTAATAAT
  • ATTAATAATGAGAAA

Secondary structure and sequence

TSD    TIR
5'



3'
    A     A    -CTTTCATATAT   -C     AAAA  A          -  -  T          --        A      A   --------           GGAGGAGAGAGG GA  GAGAATGGAAGAGAGAGGCGAGAGAGAGGGGGAAAAGAGTGGGAGAAAGGTGAATTGTATATATATATTATTGGTTAGATAATTGTATATTATACATATGTAATTGTATATATGGCAAGAGAGATTGGGAGATAGAGGAGAGAGGCGAGCGAGATTGGGATAGAGAGGAGAGAGGCAAGTGAGAGAGGACAGAGAGTAAGAGAGAGAGGTGAATTGTATATGTATATAATTTTATAT
ATTA TAATG GAAA            AGC  ACTTA    TA TTAATTACTC TC TA CTATAGTTTG  ATAATTAC ATTTGT GCT        ACATGTTATTT            C  GC                                                                                                                                                                                                                                             
|||| ||||| ||||            |||  |||||    || |||||||||| || || ||||||||||  |||||||| |||||| |||        |||||||||||            |  ||                                                                                                                                                                                                                                             A
TAAT ATTAC CTTT            TCG  TGAAT    AT AATTAATGAG AG AT GATATCAAAC  TATTAATG TGAACG TGA        TGTATAATGAA            C  TC                                                                                                                                                                                                                                             
    A     C    TAATGCGCCTAT   TT     -ATG  A          T  T  C          AG        G      C   TTGTAATA           ------------ --  AACTGAAGCTCAAACATATTAATCAGTATAAACATATACATATTAAGCAGTCCTATATGTTTATTTATACATATTATACGTTAAAAAATCGGATATATGGATATGATAAATGGAGAGAGGGTGAGAGACGGGAGAGAGCAAGAGGAGAGAGGAGGGAGAGAGTTAGACTGAGCGGAGAGAGGAGGGAGAGTGTTAGGGCGAACGGTAAATATGTTTACATATACATATTATATGTCA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End