SE3720275

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11343
  • Solanum lycopersicum
  • SE3720275
  • Mutator
  • M2
  • SL2.40ch09:54749981-54750308
  • TAAAATTTT
  • AAAATTTTGGGAAAATACTCAAGTACCCCCTCAACCTATGCCCGAAATCCCAAATACACACTTATACTATACTAAGGTCCTATTACCCCCCTGAACTAATTTTATATGTAATTTTCTACCCCTTTTTAGCCTACGTGGCACTA

Secondary structure and sequence

TSD    TIR
5'



3' 
T        --    A   A                                C  AAT                                          A       AT        C              C            GTTCGAAAAAAAAAGTCA    TC
 AAAATTTT  GGGA AAT CTCAAGTACCCCCTCAACCTATGCCCGAAATC CA   ACACACTTATACTATACTAAGGTCCTATTACCCCCCTGAACT ATTTTAT  GTAATTTT TACCCCTTTTTAGC TACGTGGCACTA                  ACCA  
 ||||||||  |||| ||| |||||||||||||||||||||||||||||||| ||   |||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||| |||||||||||||| ||||||||||||                  ||||   
 TTTTAAAA  CCCT TTA GGGTTCATGGGGGAGTTGGATACGGGCTTTAG GT   TGTGTGAATATGATATGATTCCAGGATAATGGGGGGACTTGA TAAAATA  TATTAAAA ATGGGGAAAAATCG ATGCACCGTGAT                  TGGT  
         AT    A   C                                A  CTC                                          A       AT        A              A            ---------AGAACACCC    TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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