Plant MITE

SE3710278

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11346
Solanum lycopersicum
SE3710278
Tc1/Mariner
St1
SL2.40ch03:20179991-20180250
TA
TACTCCCTCCGTC

Secondary structure and sequence

TSD TIR

5'

3'

         C   AAGAAT           TTGCGCT    GAAAGTCAATTTGACTAATTTTCAAAGGTAAATTAGATTACATTAATTCGATATTTTAAACAAAAAAAATTAGATATTCTAAAACTATATG
TACTCCCTC GTC      TGTTTGTCATG       TATC                                                                                           
||||||||| |||      |||||||||||       ||||                                                                                            
ATGAGGGAG CAG      ACAAACAGTAC       AGAT                                                                                           
         C   GCCATT           ----CAA    AAAAATCTCAGTTTGATATTTTTGAAACTGATTGTAAAATTTTACATAAAAAGTAGTATAATTATACGTTTTTCATTAAATATCATGAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710278

TACTCCCTCCGTCAAGAATTGTTTGTCATGTTGCGCTTATCGAAAGTCAATTTGACTAATTTTCAAAGGTAAATTAGATTACATTAATTCGATATTTTAAACAAAAAAAATTAGATATTCTAAAACTATATGAAAAGTACTATAAATTACTTTTTGCATATTAATATGATGAAAAATACATTTTAAAATGTTAGTCAAAGTTTTTATAGTTTGACTCTAAAAATAGAAACCATGACAAACATTACCGGACCGAGGGAGTA

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