SE3710282

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11350
  • Solanum lycopersicum
  • SE3710282
  • Tc1/Mariner
  • St5
  • SL2.40ch01:77902423-77902686
  • TA
  • TACTATCTTCGTCCCTAATTACTTGTCCACT

Secondary structure and sequence

TSD    TIR
5'



3' 
    A    CGT C  AA             -------TT  -    -- A AATTGTCCCTAATTACTTGTCCATTTTGATAAATCAAGAAAGAATAATTTATTTAACCTATTATACCCACAATTAATTGACTAAT
TACT TCTT   C CT  TTACTTGTCCACT         TT CTTT  T T                                                                                     
|||| ||||   | ||  |||||||||||||         || ||||  | |                                                                                     T
ATGA AGAG   G GA  AATGAACAGGTGA         TG GTGG  C A                                                                                     
    A    ATC A  AA             TCACTTAAC  C    AT - TTCTTTTATTACTTACTGTATCACTCAAATGGTAAAATGGGGATAATTCATACTTCACCTACTTTTCAATATGTAAAAAGTTTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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