Plant MITE

SE3720284

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11352
Solanum lycopersicum
SE3720284
Mutator
M2
SL2.40ch08:43354057-43354381
ATCAAATAA
GGGAAAATGCACAAGTACCCCTTCAACCTATGCCCGAAATCCCGGAGACACACTTATACTATACTAAGGTCCTATTACCCTCCTGAACTTATTTTATAAGTAATTTTCTACCCCTTTTCAGCCTACGTGGCACTAGTTTG

Secondary structure and sequence

TSD TIR

5'

3'

ATCAAATAA    A     A                              C                                                       A      T  C     C     A               G    AAAAAAAAG     CA
         GGGA AATGC CAAGTACCCCTTCAACCTATGCCCGAAATC CGGAGACACACTTATACTATACTAAGGTCCTATTACCCTCCTGAACTTATTTTAT AGTAAT TT TACCC TTTTC GCCTACGTGGCACTA TTTG         TCAAC  
         |||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||| ||||| ||||||||||||||| ||||         |||||   
         CCCT TTACG GTTCATGGGGGAGTTGGATACGGGCTTTAG GTCTCTGTGTGAATATGATATGATTCCAGGATAATGGGGGGACTTGAATAAAATA TTATTA AA ATGGG AAAAG TGGATGCACCGTGAT GAAC         GGTTG  
AATAAACTA    A     G                              A                                                       A      T  A     -     C               A    ----ACCCG     CT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720284

ATCAAATAAGGGAAAATGCACAAGTACCCCTTCAACCTATGCCCGAAATCCCGGAGACACACTTATACTATACTAAGGTCCTATTACCCTCCTGAACTTATTTTATAAGTAATTTTCTACCCCTTTTCAGCCTACGTGGCACTAGTTTGAAAAAAAAGTCAACCATCGTTGGGCCCACAAGATAGTGCCACGTAGGTCGAAAAGGGTAAAATATTATTAATAAAATAAGTTCAGGGGGGTAATAGGACCTTAGTATAGTATAAGTGTGTCTCTGAGATTTCGGGCATAGGTTGAGGGGGTACTTGGGCATTATCCCATCAAATAA

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