SE3720289

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11357
  • Solanum lycopersicum
  • SE3720289
  • Mutator
  • M2
  • SL2.40ch09:66966453-66966775
  • TCAAATATA
  • AGGGATGATGTTCAAGTACCCCCTCAACCTATGTCCGATATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCTGAACATATTTTATTAATAATTTTTTACCCTTTTCGACCTACGTGGCACTATCTTGTGGGGCCCAAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TCAAATAT           T      C        C          T  C                             C               A        TAA                 CG -      T       TC   T    CCC    ATGG
        AGGGATGATGT CAAGTA CCCCTCAA CTATGTCCGA AT TCAGAGACACACTTATACTATACTAAGGT CTATTACCCCTGAAC TATTTTAT   TAATTTTTTACCCTTTT  A CCTACG GGCACTA  TTG GGGG   AAGG    
        ||||||||||| |||||| |||||||| |||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||   |||||||||||||||||  | |||||| |||||||  ||| ||||   ||||     
        TCCCTATTACG GTTCAT GGGGAGTT GATACGGGCT TA AGTCTCTGTGTGAATATGATATGATTCCA GATAATGGGGACTTG ATAAAATA   ATTAAAAGATGGGGAAA  T GGATGC CCGTGAT  AAC TTTT   TTTC    
ATATAAAC           T      A        A          T  T                             A               A        TTC                 AA C      T       CA   T    --T    AGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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