SE3730293

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11361
  • Solanum lycopersicum
  • SE3730293
  • hAT
  • Hat15
  • SL2.40ch04:55675683-55676165
  • CAAGAAAT
  • CTAAGTTGCTCGGACTC

Secondary structure and sequence

TSD    TIR
5'



3' 
CAAGAAAT                 --   TGCGGCTGTCTGATATGGCTACGAATCTAGAGGTCGGATCTTTCATGATCTAATTTTTAAGATTCGGGATATGGATCCATGTATAGATAAGGGTGTGGGGATTCACCTAAATATAATTAAAATATCTAAAAATAGAGTTTATAAAACCTTAATTATGAGATATTATGTGGAGAACTCGAGGAAAATATTGGAAAGAGATTAAAGGACAATGA
        CTAAGTTGCTCGGACTC  GGG                                                                                                                                                                                                                    
        |||||||||||||||||  |||                                                                                                                                                                                                                    G
        GATTCAACGAGTTTGAG  GTG                                                                                                                                                                                                                    
TAAAGAAC                 AA   AAAACCACGGCGTGGACACAGCTGTGCTGTACCCACACCCACACCCACACCCACACACTAGGTACAGGCTATACCAGTTGGTTAAAACCCATCAAACTGGTTTTACCTACCTCTTTCAGACTATCAAAATTACTAAAGATATTAGTTATCGTGTGTCCGATTCCACTTTAACTTCTTTTACCTTATGGAAAATATATCTTTAAATATACAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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