Plant MITE

SE3710296

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11364
Solanum lycopersicum
SE3710296
Tc1/Mariner
St3
SL2.40ch04:56833581-56833833
TA
TACTCCCTCCGTTTAAAAAAGAATGATC

Secondary structure and sequence

TSD TIR

5'

3'

     C   C    A      AA     ATAT        ---   TCTCTTTAAAAAAGAATGACCTCTTTCCTTTTTTGGCAACAATTTAACTTTAACTTTCTACATGACATATTTAAGACCACAA
TACTC CTC GTTT AAAAAG  TGATC    TTCTTTTT   TAG                                                                                  
||||| ||| |||| ||||||  |||||    ||||||||   |||                                                                                  G
ATGAG GAG CAAA TTTTTC  ACTGG    AAATTGAA   TAC                                                                                  
     A   A    G      CA     -ATC        TCT   TTCAAATTCTTTTCTTTCTTTTGAAAAATCAGAACACCAAAATTTAATTTCAATACAGTTTACATCGTTTTACGAAAAACTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3710296

TACTCCCTCCGTTTAAAAAAGAATGATCATATTTCTTTTTTAGTCTCTTTAAAAAAGAATGACCTCTTTCCTTTTTTGGCAACAATTTAACTTTAACTTTCTACATGACATATTTAAGACCACAAGATCAAAAAGCATTTTGCTACATTTGACATAACTTTAATTTAAAACCACAAGACTAAAAAGTTTTCTTTCTTTTCTTAAACTTCATTCTAAGTTAAACTAGGTCAACCTTTTTGAAACAGAGAGAGTA

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