SE3740300

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11368
  • Solanum lycopersicum
  • SE3740300
  • CACTA
  • Ca3
  • SL2.40ch08:1392499-1392640
  • AGT
  • TCACTACAAGAAAACTGTGGATTACATGGGGATTTTCCTGGGTATTAGTATGAAAATTCGCGGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
AG       A                             C    T               C      AACT
  TCACTAC AGAAAACTGTGGATTACATGGGGATTTTC TGGG ATTAGTATGAAAATT GCGGGA    
  ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||    T
  AGTGATG TCTTTTGACACTTAATGTACCTCTAAAAG ACCC TAATCATACTTTTAA CGTCCT    
TG       C                             -    T               A      CTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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