SE3730304

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11372
  • Solanum lycopersicum
  • SE3730304
  • hAT
  • Hat16
  • SL2.40ch03:11890551-11891049
  • AGTAGGTT
  • TTTAGAGATGGCAATGGGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
AGTAGG     AG             AGG  GGA    --    TAAGGCTCTGTGGGGCGGGTGGGTTGAAGTGGATTTTTTAAAAATTAATGAGGGGCGGGCGAGTAGATGTTATTTCACGTGGATTCTAATTTAATTTTAACTTTTTACATGTTATAAAGTGATAGAACATTATTTGTTAAGATAATTTCATAAAGCTACTAAAATATTCAAAATAGTAAATAAAATGGTTCAACAAAAAATAATACAAT
      TTTAG  ATGGCAATGGGGT   GC   TGCA  GGGT                                                                                                                                                                                                                 
      |||||  |||||||||||||   ||   ||||  ||||                                                                                                                                                                                                                 T
      GAATC  TACCGTTATCCCG   CC   ACTC  AACT                                                                                                                                                                                                                 
TTGGAT     CG             ---  ---    TT    CGAATTGGAGGTTTTTAAAATTAGGCGTATCGTTGTGTAAAGTATAAGTTGGGCGGGGTGTATTAAAAAATTATAAAAGAAAAAGATCAATACAAACTATAATTTAAATTTTAAGTATTTTTATTTAAGTAAAAAGTAATTCAATATAATTAAATTATTCTATCACTGAACTGAAATGAAAAATATCCTGTAAAATTTTTGTACGTTCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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