SE3730308

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11376
  • Solanum lycopersicum
  • SE3730308
  • hAT
  • Hat6
  • SL2.40ch04:53115035-53115439
  • ACTCTAAC
  • CAGTGTTATCAAAGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
ACTCTAAC                GAAAA    AAAA      - -- A  G ---  GTGGGAGGCTGGGAGCTTTAAGCGCAAAGCACAAATAAAGCGTGGGCTTTAATAAAAAAGGCGCAAAGGGAGAAAAGAATACAAATGTATATGTTTAGTCAAAGACTAAATTATAAACATGAATGACAAATATATGACCAAAGAAATTGTA
        CAGTGTTATCAAAGGC     GCGC    AAAGCT C  T AG T   TC                                                                                                                                                       
        ||||||||||||||||     ||||    |||||| |  | || |   ||                                                                                                                                                       T
        GTCACAATAGTTTCCG     CGCG    TTCGCG G  T TC G   CT                                                                                                                                                       
CAATCTCA                -----    -AAA      C AA -  - GGA  TCGCTCCGAGTTTTGCACAACTCGCGAAGCGGAGCGAAATACACGCGAAGTCACAGCAGTAGTTCCAAGATTCTATTTGTAAAGGAACGGTTACTCGGAGAATAATTCTTTACTTTGATTTATTAACTATGAAGAGAAATAGTATTTTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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