Plant MITE

SE3720309

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11377
Solanum lycopersicum
SE3720309
Mutator
M2
SL2.40ch08:16088091-16088415
TTTTAATAG
TTAATAGGGATAATGCCCAAGTACCCCCTCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCTGAACTTATTTTA

Secondary structure and sequence

TSD TIR

5'

3'

TT    -T     T                             C                                               -             TTAA          C                        TC   T   -----CC    GA
  TTAA  AGGGA AATGCCCAAGTACCCCCTCAACCTATGCC GAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCC TGAACTTATTTTA    TAATTTTTTA CCCTTTTTAGCTTACGTGGCACTA  TTG GGG       CAAT  
  ||||  ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    |||||||||| ||||||||||||||||||||||||  ||| |||       ||||   
  AATT  TCCCT TTATGGGTTCATGGGGGAGTTGGATACGG CTTTAGAGTCTCTGTGTGAATATGATATGATTCCAGGATAATGGGGG ACTTGAATAAAAT    ATTAAAAGAT GGGAAAAATCGGATGCACCGTGAT  AGC TTC       GTTG  
AT    TT     T                             A                                               G             TTAC          A                        CA   T   TTTTTCA    AT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3720309

TTTTAATAGGGATAATGCCCAAGTACCCCCTCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCTGAACTTATTTTATTAATAATTTTTTACCCCTTTTTAGCTTACGTGGCACTATCTTGTGGGCCCAATGATAGTTGACTTTTTCTTTCGAACTAGTGCCACGTAGGCTAAAAAGGGATAGAAAATTACATTTAAAATAAGTTCAGGGGGGTAATAGGACCTTAGTATAGTATAAGTGTGTCTCTGAGATTTCAGGCATAGGTTGAGGGGGTACTTGGGTATTTTCCCTTTTTAATA

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