SE3720310

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11378
  • Solanum lycopersicum
  • SE3720310
  • Mutator
  • M2
  • SL2.40ch04:57102323-57102647
  • TTATTTATA
  • TATTTATAGGGATAATGCCCAAGTACCCCCTCAATCTATGCCCGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCCTGAACTTATTTTATTAATAATTTTTTACCCCTTTTTAGCCTACGTGGCACTA

Secondary structure and sequence

TSD    TIR
5'



3' 
T   TT       -T     C                             C                                                        TAA             C        C            ---------TCTT  G    CAA
 TAT  ATAGGGA  AATGC CAAGTACCCCCTCAATCTATGCCCGAAAT TCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCCTGAACTTATTTTAT   TAATTTTTTACCC TTTTTAGC TACGTGGCACTA             GT GGCC   
 |||  |||||||  ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| |||||||| ||||||||||||             || ||||   C
 ATA  TATTCCT  TTACG GTTCATGGGGGAGTTGGATACGGGCTTTA GGTCTCTGTGTGAATATGATATGATTCCAGGATAATGGGGGGACTTGAATAAAATA   ATTAAAAGATGGG AAAAATCG ATGCACTGTGAT             CA TTGG   
    TT       TT     T                             A                                                        TTC             -        A            CAAACTTTTTTTT  G    TAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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