SE3740313

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11381
  • Solanum lycopersicum
  • SE3740313
  • CACTA
  • Ca4
  • SL2.40ch04:20498453-20498594
  • TTA
  • ACACAATAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT    A      ACAA    A    A    -  A     G   A                  C     CTT
  ACAC ATAAAA    TGTG ATTA ATGA GA TTTTC TGG GATTAGTATGAAAGTTTG AGAAA   
  |||| ||||||    |||| |||| |||| || ||||| ||| |||||||||||||||||| |||||    
  TGTG TGTTTT    ACAC TAAT TACT CT AAAAG ACT TTAATCATACTTTTAAAT TCTTT   
AT    A      CTTA    A    G    T  A     -   C                  A     TTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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