SE3740314

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11382
  • Solanum lycopersicum
  • SE3740314
  • CACTA
  • Ca3
  • SL2.40ch08:50857815-50857958
  • AGA
  • CACTACAAGAAAAATGTTAATTACATGGGGATTTTCCTGGGATTAGTATGAAAATTCGTAGGAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
AGA             A   T     CA          C      -              --C        TT
   CACTACAAGAAAA TGT AATTA  TGGGGATTTT CTGGGA TTAGTATGAAAATT   GTAGGAAA  
   ||||||||||||| ||| |||||  |||||||||| |||||| ||||||||||||||   ||||||||  T
   GTGATGTTCTTTT ACA TTAAT  ATCCCTAAAA GACTTT AATCATATTTTTAA   CGTTCTTT  
AGA             C   C     AA          A      T              AAA        TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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