SE3740315

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11383
  • Solanum lycopersicum
  • SE3740315
  • CACTA
  • Ca4
  • SL2.40ch04:20498453-20498594
  • TAA
  • ACACTACAAAAGAATTGTGTATTACATGAAGATTTTTCTGAGAATTAGTATGAAAATTTATAGAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA    TAC     AAT    T    C    A  T     --T    A           A   A      AAT
  ACAC   AAAAG   TGTG ATTA ATGA GA TTTTC   GAGA TTAGTATGAAA TTT TAGAAA   
  ||||   |||||   |||| |||| |||| || |||||   |||| ||||||||||| ||| ||||||    
  TGTG   TTTTT   ACAC TAAT TACT CT AAAAG   CTCT AATCATACTTT AAA GTCTTT   
AA    TTA     GTT    T    T    -  T     CAC    -           C   C      GAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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